rs46617366 SNP Detail

Summary

• ID
  rs46617366
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:112793946 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTGC ATGTATGACT GTATTTCATG
  K
  TCGAGCCTAC AAGTGATTGT GGGCT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss138728308	ENSMUSSNP6059833	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G
ss324171483	CHEV_12_114068537	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs46617366					SNP	T	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:112793946 () rs orientation: forward

Symbol	Name	Function Class
Cdca4	cell division cycle associated 4	903 bp upstream
Cpgi5185	CpG island 5185	167 bp distal
Gm52009	predicted gene, 52009	50 bp downstream
Gm56552	predicted gene, 56552	within coordinates
Rr265126	regulatory region 265126	within coordinates
Rr387795	regulatory region 387795	within coordinates
Tssr3960	transcription start site region 3960	847 bp upstream
Tssr115439	transcription start site region 115439	1165 bp downstream
Tssr115440	transcription start site region 115440	641 bp downstream
Tssr115441	transcription start site region 115441	692 bp upstream
Tssr117911	transcription start site region 117911	1220 bp upstream
Tssr117912	transcription start site region 117912	900 bp upstream
Tssr117913	transcription start site region 117913	822 bp upstream