rs46617496 SNP Detail

Summary

• ID
  rs46617496
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:19487370 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTCT AAAAGAGAAA CTGATATAGT
  Y
  AAGAAAATCT AGACGAAGTA GCCAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148742637	ENSMUSSNP4234473	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
ss324277940	CHEV_13_19395069	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46617496					SNP	C	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:19487370 () rs orientation: forward

Symbol	Name	Function Class
Rr275255	regulatory region 275255	1970 bp distal
Tcrg	T cell receptor gamma chain	within coordinates
Trgc2	T cell receptor gamma, constant 2	1860 bp downstream
Tssr118532	transcription start site region 118532	1923 bp upstream
Tssr121559	transcription start site region 121559	1178 bp downstream
Tssr121560	transcription start site region 121560	1237 bp downstream
Tssr121561	transcription start site region 121561	1788 bp downstream