rs46618060 SNP Detail

Summary

• ID
  rs46618060
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:193907324 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATAGGCTG CCTCTGGTGC
  CAGATGAGTC CTAGATAGGA AATCAAGCAG GATGTAAGCT CTGTGGTACT GCCTCTAAGA
  ATTGGGAGGG GGTCAGAGAA AGAGGGGACT AGACTGCTCC TGGTGCTGCA CTGAGGGATG
  AGCCGAACAG GTCACATGTG CTGCATCTTC TCAAGCTCAT GCCTATGCCT CAGCCTGCTC
  K
  TTACCCAAGG AAGACAACAG AGAAGCATTT CTGGGCTCAT TCCTACCCCA GATCCCTATC
  AGGCAATATG TTGAGTTCTT TCCTCATGAA TGAATTGCAG TCTGTTTCAG TTCACAAAGA
  TACCCCCTTT TCTACTCAGA ATTTAGGAAG TCTGGTAACC TCCACTGTGG GGGAACACAC
  TGTTCCCCAG TCTGTTCTTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60365279	NES15865002	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46618060					SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60365279	NES15865002	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:193907324 () rs orientation: forward

Symbol	Name	Function Class
Rr914	regulatory region 914	1266 bp proximal
Rr426624	regulatory region 426624	1895 bp distal
Rr426625	regulatory region 426625	1491 bp distal
Rr426626	regulatory region 426626	1840 bp distal
Rr426627	regulatory region 426627	1714 bp distal
Rr426628	regulatory region 426628	686 bp distal
Rr426629	regulatory region 426629	716 bp proximal
Rr426630	regulatory region 426630	1369 bp proximal