rs46618228 SNP Detail

Summary

• ID
  rs46618228
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:92041296 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCACTTAGC ACATGTGTAT
  TCTGGGCCAA CCCTGTGCAG GGCTCTGTTT TGGGAATCTA TACAGCTGTT TTGGGTAGCT
  TGGTTTTAGG TGACCTGCTA ACTTACCAAT GCAGTTCCTT TGGTCATATA CATACTATAC
  AGCAGTGAAA CTTTTGCCTG GATAGCCCAA CGCCACACCC TCAGCTGTTA CTTATCCTCT
  Y
  ACAAGATGAA GTCAGCTTCA ACAGAACCAA TGAAGAACTA GGTATGAAAT CTACTCCTCA
  TCTTACAGCT GGAGATGGGT GTGTCTACCA CTGCAATAGT GAGCCTATGC TGTAGGCGGT
  CCTTCCAAGG TCAGCCTTGT CTTTCGAAGT TACACTGATG TAATCTCATT GTCACCACCA
  GGGGTCAATA CAACCACTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61925383	NES17107783	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46618228					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61925383	NES17107783	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:92041296 () rs orientation: forward

Symbol	Name	Function Class
Rasgrf2	RAS protein-specific guanine nucleotide-releasing factor 2	within coordinates
Rr274007	regulatory region 274007	within coordinates
Rr280536	regulatory region 280536	41 bp proximal