rs46620072 SNP Detail

Summary

• ID
  rs46620072
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:74269307 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTCCAGGT TCTCAATAAA
  AAGGGGACTT GCTGAGTGTA TATAACGGGG TGCAGCGTAC CCCGCAACTA GCAAAACCAT
  CCGGTTGCTG AAGTGGCCAA GGCAGGAGAA GCAGGTCCAA TTTAACGGGT AGAATCGACA
  ATGGTATGCC GGACCTCGCA CTGCGCTCCG CTGGGAAGGA AGCGACTGCC AGTGGGCTAG
  R
  TGTCACTCGA CCTTGGGGAG GAGCGGCCTC GAATCCACAG GTTCTAGCTG CTGGCTTAGG
  AGCCCACAGC ACCCAGAGAG CCCGGGCGTG AGCAGGGCAG GCGGGAGTGC TTCTAACGCA
  GCAGGACTGT TTGCGTTCAC GTGTGCGCAG CGGGGGCGGG AAGGCCCCGC CCTGGCGCGG
  GAGGAGGCAG CGGGATTAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52662195	NES15474930	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46620072					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52662195	NES15474930	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:74269307 () rs orientation: forward

Symbol	Name	Function Class
0610040A22Rik	RIKEN cDNA 0610040A22 gene	within coordinates
Cpgi5859	CpG island 5859	within coordinates
Gm41003	predicted gene, 41003	913 bp upstream
Rr281645	regulatory region 281645	within coordinates
Slc9a3	solute carrier family 9 (sodium/hydrogen exchanger), member 3	269 bp upstream
Tssr120348	transcription start site region 120348	217 bp upstream
Tssr120349	transcription start site region 120349	247 bp upstream
Tssr120350	transcription start site region 120350	1330 bp upstream