rs46620295 SNP Detail

Summary

• ID
  rs46620295
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:18999261 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A GTGGATACAG GCCGACTAGA AAGGACAGAG CTGCCAGGAC
  TAGCAGACGG CCCGGGAGTG AGCCGAGAAC AGCCTCTGCC TGGCCTTAGT TTCCCTATCT
  S
  TACCACCTCT CCACCCCCAC CTCAGGTCAG ATAAGAAGGG CGGAGTGTGA GGGCAGATCC
  CAGGGCCCTG GAATTGCCTC CCCTGAGGCC ACATTTATTG G                    
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss148471804	ENSMUSSNP2490173	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs46620295					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:18999261 () rs orientation: forward

Symbol	Name	Function Class
Rr167144	regulatory region 167144	within coordinates
Rr167145	regulatory region 167145	739 bp proximal
Tssr64812	transcription start site region 64812	960 bp upstream
Tssr70883	transcription start site region 70883	853 bp upstream
Tssr70884	transcription start site region 70884	508 bp upstream
Tssr70885	transcription start site region 70885	653 bp downstream
Tssr70886	transcription start site region 70886	1206 bp downstream
Vasp	vasodilator-stimulated phosphoprotein	within coordinates