rs46623735 SNP Detail

Summary

• ID
  rs46623735
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:5855931 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGTCTCTG AGAGCAGCTT
  CTGAGAACAC TCAAGGTTGA CTTCTGGCAT CCCCACACAT TGTACATATG CATGAATGTG
  TGCCATAGCC ACACACGGGC TTGTATACAT TCCACACAAA GACTTACATG GCCCTACTCA
  GTTTCTTTCA AAGAGCCTTG GTCTCTCTGT CGATTATAGA GCTGTCCCTA CTGCCTTTCC
  R
  TCAGTCAGGG CTTTGCTGGT GGTTTAAACG TCTATGTCTT TTTTTCCTTT TTCTTTGAAC
  TGTAGTCACA CCATATTATC CCCGCTGGTC TCAAAGTGTC AGCCTCCCAA ATCGCTAGGA
  CTGTAGGCAT GCGCCGTCCA TCATACTTGG CAAAGTTCTA CTTCTGAAAC ACCATGAGCA
  TTGAGCAAGA CCGCTGGCAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss146275380	ENSMUSSNP5663842	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs46623735					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:5855931 () rs orientation: forward

Symbol	Name	Function Class
Nudt5	nudix hydrolase 5	within coordinates
Rr49685	regulatory region 49685	1670 bp proximal
Tssr16009	transcription start site region 16009	1725 bp upstream