rs46624417 SNP Detail

Summary

• ID
  rs46624417
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:153337467 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTTTTTTT AAACAAATTA
  ACATTTTTAT ATCCTGCCAG CCTCAATTTC TAGTACTATT CAGTGGATAC AACTCCTGTA
  AGGAAAAGCT TTTCTCAGTA CCTTCTTTTT TAGAGAATGT AAGATGGTTT ATGCCTTGGA
  AAAGAAAAGT CCTCCCAAAA GCTTAGGGTT GAGTGGTTGG TTCACAACTG GCAGTGCCCC
  S
  TGGAAGGATC TGGAAGTTTA GGATACGAGA CTTAGCTGGA GAATATAGAT CATGCAGTGT
  AGTCAAAGCC CACCCATGTC CAGAGCCCTC TCCCTCTGCA GGGACCCCAT CCAACCCTTC
  TTTGCTGTCT CTCCTCATCT AAGAGTAAGA CATGCTGCAG TAGCCTGTTG CACACCCCAG
  CTGCAGCCAC ACCTTCACAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136110143	ENSMUSSNP5002631	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46624417					SNP	C	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153337467 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr587712	regulatory region 587712			202 bp proximal
St6galnac3	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3			Intron
				Noncoding-Transcript-Variant
Tssr32432	transcription start site region 32432			901 bp downstream
Tssr36231	transcription start site region 36231			705 bp upstream
Tssr36232	transcription start site region 36232			1635 bp downstream
Tssr36233	transcription start site region 36233			1687 bp downstream