rs46624566 SNP Detail

Summary

• ID
  rs46624566
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40641298 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAACCATGTC TCAAAGAACA AAAACAACAA GAACAAAAAT
  AATAATTATT TGAGAGGGTT GAAGGGCCTG GGTCAAGGAA GACATTAGTG TTTAGTAGTA
  A
  TAATAATAAT AATAATAATA ATAATAATAA TAATAATAAG GCTGGAGAGA TGGCTCAGCG
  GTTGAGAGCA CTGACTGCTC TTCCGAAGGT CCTGAGTTC                       
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss136336753	ENSMUSSNP6008511	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs46624566					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40641298 () rs orientation: forward

Symbol	Name	Function Class
Clmp	CXADR-like membrane protein	within coordinates
Cpgi21598	CpG island 21598	714 bp proximal
Gm68229	predicted gene, 68229	within coordinates
Gm68234	predicted gene, 68234	945 bp upstream
Rr1916	regulatory region 1916	within coordinates
Rr676903	regulatory region 676903	455 bp proximal
Rr676904	regulatory region 676904	956 bp proximal
Rr676905	regulatory region 676905	1590 bp proximal
Tssr84462	transcription start site region 84462	952 bp upstream
Tssr84463	transcription start site region 84463	1001 bp upstream