rs46625372 SNP Detail

Summary

• ID
  rs46625372
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:78357036 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             TTCTCTGTTG ACAGAAAGAA ATCCTGAGCA CGCCCCTACT CACTGTTCAG
  R
  AGGGAGCTGT AGAAGATCTA GTTCTTGCAG AACCAGAGCC TGGGTACCCT           
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J	WSB/EiJ
ss61427209	NES16810883	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A	G	G	A	A		G	A		A
ss323016288	CHEV_9_78297561	CHEVERUD	SCREENING_POP	f	SNP									A			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J	WSB/EiJ
rs46625372					SNP	G	A	A	A	G	G	A	A	A	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61427209	NES16810883	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:78357036 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22068	CpG island 22068	830 bp distal
Gm17324	predicted gene, 17324	968 bp upstream
Mto1	mitochondrial tRNA translation optimization 1	within coordinates
Rr401544	regulatory region 401544	1417 bp downstream
Tssr86287	transcription start site region 86287	1526 bp downstream