rs46625870 SNP Detail

Summary

• ID
  rs46625870
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:45048153 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGCATCAG AAAAATACAG
  CCTTAGTGTG ATGCTGTACA TGGTGACTTG CTTTTAAGCC TGTATCTGAG TTTGAGGGGA
  ACCTCTAGTC TATATATCCC GTTCCAGGGA CAAATGGCAG AAATGTTTGC AACTTAGAAG
  GTGTAAGTCA GCTCAAGGGC TCCTTCCTGT CAGGGTGAGA GCAAGCTTGA TAAGGCTTGG
  Y
  GAGCTAGCTA CCTGTGTGAA GAAAGGAGCT CTGGGCTGTG GAGAGAGGTT TTAGCTGTGT
  GAAGGGTTCG AAAAGGAAAA AAGTTTGACT TCTGTTCAAT CTTCTTGCTG TGTGTGACCT
  TCTGCTCGCA ATTGGTTTAC AATGACCTCT ATAGTTATAG CACAAAAGGC AGCTCTACTT
  GAGGGCTTGT ACCTTTTGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52631917	NES15456108	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46625870					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52631917	NES15456108	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:45048153 () rs orientation: forward

Symbol	Name	Function Class
Jarid2	jumonji and AT-rich interaction domain containing 2	within coordinates
Rr276124	regulatory region 276124	1553 bp distal
Tssr119569	transcription start site region 119569	1746 bp upstream