rs46626465 SNP Detail

Summary

• ID
  rs46626465
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:70885753 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACTG GCCACAACGC CCCTCTGGAC
  R
  CGTGGCCAGA GCCTTGCAGG GCCAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss146738280	ENSMUSSNP195791	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	G
ss320335128	CHEV_2_70893466	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46626465					SNP	G	A	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:70885753 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11734	CpG island 11734			within coordinates
Dcaf17	DDB1 and CUL4 associated factor 17			Coding-Synonymous
Mettl8	methyltransferase 8, methylcytidine			mRNA-UTR
				Noncoding-Transcript-Variant
Rr397032	regulatory region 397032			104 bp upstream
Rr558662	regulatory region 558662			within coordinates
Rr558663	regulatory region 558663			153 bp proximal
Rr558664	regulatory region 558664			328 bp proximal
Rr558665	regulatory region 558665			855 bp proximal
Tssr18237	transcription start site region 18237			322 bp upstream
Tssr24467	transcription start site region 24467			95 bp downstream
Tssr24468	transcription start site region 24468			107 bp downstream
Tssr24469	transcription start site region 24469			125 bp downstream