rs46626597 SNP Detail

Summary

• ID
  rs46626597
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:86142561 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAACTCAAT CAAGTCTTCA
  GGTTCTGTAG TGTCTAACTC ACTCAGCCAT TTTGCTGAGC CATATATGTA TATACATATA
  TCATATGCAA GTATATGAGT ATATGAGATA TTTTAATATA TATTTCTAAG TAGAATTTTA
  TCCATTCATC TTACATTTAA TATGTACTTT CCAATACAAA AACTATCAAG CTAACATATT
  Y
  TAGCTGAGAA CCACACACTT AGACAGTGAT GAGGCTGTGG AAATTACAGC AGAACCCAGC
  TCACAGAGGC AGCACAGCCT CCTGGGAGTC AGTGCAGGCC TCAGAAAGGG GGTGCCCCTG
  GTCTGCACAG AAGTGAATAA ATGAGTAGGA CTCTGGGACT CTGGATGTGG GAGGAGCAGA
  AGGCCACATG GGGAGCACTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52450478	NES15424489	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46626597					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52450478	NES15424489	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:86142561 () rs orientation: forward

Symbol	Name	Function Class
Ift43	intraflagellar transport 43	within coordinates
Rr258280	regulatory region 258280	440 bp proximal
Rr268782	regulatory region 268782	1441 bp proximal
Rr269813	regulatory region 269813	within coordinates