rs46626945 SNP Detail

Summary

• ID
  rs46626945
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:110664665 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACCCATCT CCATCTCGCC
  CTCCCTCCAG GGAACGAGGC CCTTTCCCAG CAGCTGAGGA AAGACCTCTG GCCCCCCTCT
  CTGAACTGAG TGGGGGCATT AAGTAGAAAC AGTTTTCTTT TTTGAGGTAT TAGCTTTTTT
  TATACAGGAT CACATTTTGC AACCCCTTGC TATGCAGAGC AGGCTGGCCC TGAATTCACA
  K
  AGATCTGCCT GCTCCTGTTG AGGTGTGTAT CATCGTCCCC AGCTGTACTC TCCAGGGCCA
  CTCCTTTTCC CTAAGACTGG CCTTTTGTGT TGGGTGCCAG GACTATTAGG TGTTGATTTT
  TAATTGTTTG CATAAAAACC ACAAGTCAAG CTCCAAGCTG TTAGGATCTC TACCCTAGAA
  GGGACTTTTG CTTTTTAGTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss138692764	ENSMUSSNP4949672	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46626945					SNP	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:110664665 () rs orientation: forward

Symbol	Name	Function Class
4932703K07Rik	RIKEN cDNA 4932703K07 gene	1115 bp downstream
Cpgi5120	CpG island 5120	1090 bp distal
Gm60092	predicted gene, 60092	834 bp upstream
Hsp90aa1	heat shock protein 90, alpha (cytosolic), class A member 1	1836 bp upstream
Rr403501	regulatory region 403501	1629 bp downstream
Rr472969	regulatory region 472969	1346 bp distal
Rr472970	regulatory region 472970	344 bp proximal
Rr472971	regulatory region 472971	845 bp proximal
Rr472972	regulatory region 472972	1482 bp proximal
Tssr115232	transcription start site region 115232	1596 bp downstream
Tssr115233	transcription start site region 115233	823 bp upstream
Tssr117789	transcription start site region 117789	1969 bp upstream
Tssr117790	transcription start site region 117790	1912 bp upstream
Tssr117791	transcription start site region 117791	1813 bp upstream
Tssr117792	transcription start site region 117792	1784 bp upstream