rs46627589 SNP Detail

Summary

• ID
  rs46627589
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:91052463 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTGGTTCA GAAAATCATC
  CAAAAGATAC TGAACAAGTG AGTCGCGATT TGTGCTTACA CCTGACTGGC ACCCGATTTC
  TGAAAATTAT AGCAGGGAAA ATCAAGGTTA ACTTCAGTTC AGGAACCTGA ATTATTATTT
  TCATTGTTAA CTTTGTCCTG TGAGCATCAG TTTGAATTGA TAGAAGGGTA CGACTAGCTC
  Y
  TTTCATCTAC ACACGTAAAA GTCCTTCCTT AATGGATGGT CGCTGTGTGT CCCTAAGAAT
  TAAGTAGATA GAACCAACTA GCGCTGGTGT AAAGCCTGTT ATCTATTAAG ATTCAATACT
  TTACCCCTGC CCTTTCCATG TCTGTGGGCT GTAAAGTCTA ACTCTTGGTT TTGGTCAAGG
  TGAGCCTCTA AGGCTTCCCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61198260	NES16702732	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46627589					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61198260	NES16702732	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:91052463 () rs orientation: forward

Symbol	Name	Function Class
Cxcl2	C-X-C motif chemokine ligand 2	within coordinates
Gm73232	predicted gene, 73232	1400 bp upstream
Rr614420	regulatory region 614420	1411 bp distal
Rr614421	regulatory region 614421	1542 bp distal
Rr614422	regulatory region 614422	721 bp distal
Tssr47224	transcription start site region 47224	895 bp downstream
Tssr47225	transcription start site region 47225	793 bp downstream
Tssr47226	transcription start site region 47226	724 bp downstream
Tssr47227	transcription start site region 47227	530 bp downstream
Tssr47228	transcription start site region 47228	467 bp downstream
Tssr47229	transcription start site region 47229	446 bp downstream
Tssr47230	transcription start site region 47230	421 bp downstream
Tssr47231	transcription start site region 47231	391 bp downstream
Tssr47232	transcription start site region 47232	244 bp downstream
Tssr47233	transcription start site region 47233	194 bp downstream
Tssr47234	transcription start site region 47234	159 bp downstream
Tssr47235	transcription start site region 47235	584 bp upstream
Tssr47236	transcription start site region 47236	604 bp upstream
Tssr47237	transcription start site region 47237	653 bp upstream
Tssr47238	transcription start site region 47238	659 bp upstream
Tssr47239	transcription start site region 47239	719 bp upstream
Tssr47240	transcription start site region 47240	731 bp upstream
Tssr47241	transcription start site region 47241	746 bp upstream
Tssr47242	transcription start site region 47242	783 bp upstream
Tssr47243	transcription start site region 47243	806 bp upstream
Tssr47244	transcription start site region 47244	840 bp upstream
Tssr47245	transcription start site region 47245	860 bp upstream
Tssr47246	transcription start site region 47246	911 bp upstream
Tssr47247	transcription start site region 47247	955 bp upstream
Tssr47248	transcription start site region 47248	1018 bp upstream
Tssr47249	transcription start site region 47249	1088 bp upstream
Tssr47250	transcription start site region 47250	1226 bp upstream
Tssr47251	transcription start site region 47251	1290 bp upstream
Tssr47252	transcription start site region 47252	1342 bp upstream
Tssr51810	transcription start site region 51810	1461 bp upstream
Tssr51811	transcription start site region 51811	1407 bp upstream
Tssr51812	transcription start site region 51812	377 bp upstream
Tssr51813	transcription start site region 51813	360 bp upstream
Tssr51814	transcription start site region 51814	603 bp downstream
Tssr51815	transcription start site region 51815	637 bp downstream
Tssr51816	transcription start site region 51816	671 bp downstream