rs46627965 SNP Detail

Summary

• ID
  rs46627965
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:73189991 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCATAAAAAA TACAATTACA
  TTGCCATAGT AACAAACACA AAGCTTAAGT ATTAATAGCA TTCCAAAATT TTTGTGGTTA
  CAGATTTAAT GATCTCAGGA ACTATTTATT AAGGTTTTGA TAAGTCATAA AAAAAATTTT
  AATTGTCACG TGTATCAAAA GAAACAATCA AAAATATAAA CTGAAAGGCA TCAGTCAAGG
  R
  GTCCTATTTG TGATTGTGTT TTTAAATGTA CATTTTTTCA TTCATATAAC TTTCTCAAAT
  GTCTATTTAC TATAATTTAC TACTACCAGG CTGCTCTATG GCCCTCGGTT ACAAGTTTGA
  ATATCCCAGA TTCTTCAAAG AAAAAAATTT GCCTTGTATG TAAAATGGTG CAATGCAGCA
  ATGGCTAAAC AGACAAGGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61020018	NES16105298	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46627965					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61020018	NES16105298	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:73189991 () rs orientation: forward

Symbol	Name	Function Class
Chaserr	CHD2 adjacent suppressive regulatory RNA	within coordinates
Chd2	chromodomain helicase DNA binding protein 2	within coordinates
Gm44686	predicted gene 44686	within coordinates
Rr167999	regulatory region 167999	within coordinates
Rr380950	regulatory region 380950	1529 bp downstream
Rr380951	regulatory region 380951	1069 bp upstream
Tssr67205	transcription start site region 67205	865 bp downstream
Tssr72948	transcription start site region 72948	970 bp upstream
Tssr72949	transcription start site region 72949	645 bp downstream
Tssr72950	transcription start site region 72950	842 bp downstream
Tssr72951	transcription start site region 72951	1182 bp downstream
Tssr72952	transcription start site region 72952	1253 bp downstream
Tssr72953	transcription start site region 72953	1476 bp downstream
Tssr72954	transcription start site region 72954	1495 bp downstream
Tssr72955	transcription start site region 72955	1580 bp downstream