rs46628327 SNP Detail

Summary

• ID
  rs46628327
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:21320333 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C TTATAATTTT CAATTTCTAG AATCTACGTT GTAAGGAAGG
  TCTCTCTCCC TTCCCTGCAA CCGAAGTGTT CTTTCTCCTC CGATGTTTAA CTACTTAAAG
  T
  AGAATTCGGG GGGAAAAAAA ATCAAAACTA GTCTTTAAAA AGAAAAATCC TGAAGACGGA
  AAACTTGGTG GGACCGACTC AGCTTGGGAG GGAACTCCAG G                    
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	MSM/Ms
ss131782957	ENSMUSSNP4233037	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	MSM/Ms
rs46628327					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:21320333 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2630	CpG island 2630	81 bp proximal
Gm12043	predicted gene 12043	within coordinates
Rr246416	regulatory region 246416	within coordinates
Rr402440	regulatory region 402440	804 bp upstream
Tssr3440	transcription start site region 3440	438 bp downstream
Tssr3441	transcription start site region 3441	468 bp downstream
Tssr3442	transcription start site region 3442	659 bp upstream
Tssr100572	transcription start site region 100572	400 bp upstream
Tssr107064	transcription start site region 107064	119 bp downstream
Tssr107065	transcription start site region 107065	239 bp downstream
Tssr107066	transcription start site region 107066	314 bp downstream
Tssr107067	transcription start site region 107067	333 bp downstream
Tssr107068	transcription start site region 107068	345 bp downstream
Tssr107069	transcription start site region 107069	810 bp downstream
Tssr107070	transcription start site region 107070	931 bp downstream
Ugp2	UDP-glucose pyrophosphorylase 2	within coordinates