rs46628895 SNP Detail

Summary

• ID
  rs46628895
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:9929257 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCACAAGT TTCTAGGGAG
  AAATAGTTAT TTGAAGCAGG GGAAGTAAGT CCCATTCCTA AGATAGCTGG CTGAAAGTGT
  TTAGGCTTTG GCTTCGAAGG TGTTTGTTTG CATGTTTGCA TTTGAACCCC AGAAGGTGTG
  GTCTTCAGGA GGTTCATTTA AATAGAAGGA ATCAGCAGGG CACAGATTAG ACACAGGTTA
  W
  GGGAAGTTGT AGCATTTGTC AGCATCAAAG CTGTGCTGGG AAAGATTGTC CTCAGGGTGA
  GTCTCCTGGA AGGGTGGCCC TATTTAAAGT GTCTTAGTAA GATTATAGGA AGAATAGCAG
  GAGAAAGAAA CACGTTTTGA AATGCCAATG AAACTATAAT TAGCTCATTC GTCTCCCCCT
  TGAGCCATTT GAACTGTAGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60370075	NES15868302	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A		A	A	A	A		T
ss320652236	CHEV_3_9864197	CHEVERUD	SCREENING_POP	f	SNP											A					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs46628895					SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60370075	NES15868302	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:9929257 () rs orientation: forward

Symbol	Name	Function Class
Gm56771	predicted gene, 56771	within coordinates
Rr367411	regulatory region 367411	1606 bp upstream
Rr573524	regulatory region 573524	834 bp distal
Rr573525	regulatory region 573525	699 bp proximal