rs46630543 SNP Detail

Summary

• ID
  rs46630543
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:74110322 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCATCTCTA ATAGTCCCCA
  CAGAAATCCC ACAGTGTCAG CAAACCCCTC CTCTACCTGC CATGCCTACA GGTTTATTCC
  AAGGGCAACC CATCGTAGCT CAAACAGATC CTCTACCTAC TCACTCTGCT CCCTTGCCAA
  CTTCTCCAGT CATTGCATGA GCTTTGCAAC TGTCTGGTTC CCAGAAGAAA CTCTGAAACC
  R
  CTCTAAGCTT TGGGTGACCA TCCTTTCCTC CTTCACCGCT TATCAGACTG TCGATCCTAC
  TGCCGGAGTC TCCTGACTCT AACCTCCTCT GCTCCCCCAC TGCCGCTGTT CCCTGATGTT
  CTGCAGTTTC CCAGCCTCCA CCCCTCCAGA CGATGCTCCC AGACTCCCCA GCTCGACCTA
  GTCCATTAGC TCCTTATCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60279645	NES15784984	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A	G	A	A	A	A	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46630543					SNP	G	A	A	A	G	A	A	A	A	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60279645	NES15784984	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:74110322 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9490	CpG island 9490	1349 bp proximal
Ehd3	EH-domain containing 3	1514 bp upstream
Rr530824	regulatory region 530824	1024 bp proximal
Rr530825	regulatory region 530825	1313 bp proximal
Tssr145810	transcription start site region 145810	1501 bp upstream
Tssr145811	transcription start site region 145811	1527 bp upstream
Tssr145812	transcription start site region 145812	1556 bp upstream
Tssr145813	transcription start site region 145813	1575 bp upstream
Tssr145814	transcription start site region 145814	1618 bp upstream