rs46632174 SNP Detail

Summary

• ID
  rs46632174
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:69195914 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGGGTAGG TCCTGGCTTC
  AGATTCTTTT CCTGTCTCTT TTTTTTTTTT TTTTTTTTTT TTTTTTTTTT TTTTTTGTGT
  GTGTGTGTGT GTGTGGTTGT ATTTCAAAAA ATTCTAAAGG AAAAAAAAAA CCTACTTGGG
  GATGAATGTG TCTGAAATCA AACATTTTTG TAAGGCCATA GCTTAACTAA AAGACAATGA
  M
  GTTTTCTGAC CATTCCAATC CTAGAACTGT GTAAATGTTT GGAAAACATT TCTTTTTCCT
  TGAAATGGGG GTTGGGAGGG GGAATGAACA GATCTGAATC TTTGTTATGG GGCTAGATGT
  CTGCATGTGT TCTAAATTAC CGCCACAACA CAGGGTCAAG GCTAGCTTGG TTCCATGGAA
  AGAGAAATAT TAGAATCCTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss61417127	NES16801206	PERLEGEN	MM_PANEL2	f	SNP	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs46632174					SNP	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61417127	NES16801206	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:69195914 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21987	CpG island 21987	679 bp proximal
Rora	RAR-related orphan receptor alpha	Intron
Rr682144	regulatory region 682144	560 bp proximal
Rr682145	regulatory region 682145	1061 bp proximal
Tssr85839	transcription start site region 85839	228 bp downstream
Tssr85840	transcription start site region 85840	1209 bp upstream
Tssr85841	transcription start site region 85841	1233 bp upstream
Tssr85842	transcription start site region 85842	1270 bp upstream
Tssr85843	transcription start site region 85843	1277 bp upstream