rs46635404 SNP Detail

Summary

• ID
  rs46635404
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:87753312 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAACC ATTCTCCAGC CCCACTTTCC
  K
  TTTTTGGAAT TTGATAGCTT TTGCT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
ss60762273	NES16403479	PERLEGEN	MM_PANEL2	f	SNP			T	T	T	G			G	G
ss144885053	ENSMUSSNP6459883	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G					G
ss319829836	CHEV_1_89722165	CHEVERUD	SCREENING_POP	f	SNP								T			G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
rs46635404					SNP	G	G	T	T	T	G	G	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60762273	NES16403479	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:87753312 () rs orientation: forward

Symbol	Name	Function Class
Rr371669	regulatory region 371669	762 bp upstream
Rr414853	regulatory region 414853	612 bp distal
Rr414854	regulatory region 414854	517 bp distal
Rr414855	regulatory region 414855	1468 bp proximal
Sag	S-antigen, retina and pineal gland (arrestin)	Intron