rs46635742 SNP Detail

Summary

• ID
  rs46635742
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:37876355 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAATGACA GGGGCTGATG
  GGGTGGGCAG GTGTCAGCTC AAGGGAACAT GTGCAGAGCA TTATGAAGCC ACAGAGGAGC
  TGGCAGGAGC CCCCACTGCA GAGTCATGGG CCACGGCCTT CTGCACAGCC TCCAAGAAGA
  AACCACCTGT TTGTTGGCCA GAAAGACCAA CTGCTCAATG CGCCTAGATG GAGTCGCAAA
  Y
  ACTGTCGTGA TTTAAAAACA CAATTGAAAA CACAAAGCAA AGTTGATTTC TGCACACACT
  TATTGCCAGC AACATGGTCC CAGACACACT TGGCTGTTTG TACATCTTAT CTCTAGGACA
  AAAAAAAAAA AAAAGAGGAT CCTAAAATGC TGTTCTGCAA AGAAAGAAGA GTATGAACTC
  TCAGTGTTTA TGGTGACAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss61764381	NES17699224	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs46635742					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61764381	NES17699224	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:37876355 () rs orientation: forward

Symbol	Name	Function Class
Rr275856	regulatory region 275856	45 bp proximal
Rr279068	regulatory region 279068	748 bp proximal
Rr283303	regulatory region 283303	1555 bp distal