rs46637421 SNP Detail

Summary

• ID
  rs46637421
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:59653640 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCTT TTTGCCACAC AACCACATGA
  Y
  CTTGAGAAGT AGTTATAGAG ATCTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
ss61014588	NES16116695	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	C	T	T	T	C		T	C
ss144685568	ENSMUSSNP3441148	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
ss322224976	CHEV_7_67148778	CHEVERUD	SCREENING_POP	f	SNP										T			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
rs46637421					SNP	T	C	T	T	C	T	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61014588	NES16116695	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:59653640 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19176	CpG island 19176	416 bp proximal
Del(7Ube3a-Snrpn)1Alb	Deletion, Chr 7, Beaudet 1	within coordinates
Gm38393	predicted gene, 38393	Intron
Gm72353	predicted gene, 72353	within coordinates
Rr346	regulatory region 346	1148 bp proximal
Rr647544	regulatory region 647544	218 bp distal
Rr647545	regulatory region 647545	within coordinates
Rr647546	regulatory region 647546	1147 bp proximal
Snrpn	small nuclear ribonucleoprotein N	Intron
Snurf	SNRPN upstream reading frame	Intron
Tssr2280	transcription start site region 2280	1281 bp downstream
Tssr66968	transcription start site region 66968	194 bp downstream
Tssr66969	transcription start site region 66969	529 bp upstream
Tssr72702	transcription start site region 72702	897 bp upstream
Tssr72703	transcription start site region 72703	802 bp upstream
Tssr72704	transcription start site region 72704	736 bp upstream
Tssr72705	transcription start site region 72705	706 bp upstream
Tssr72706	transcription start site region 72706	74 bp downstream
Tssr72707	transcription start site region 72707	1187 bp downstream
Tssr72708	transcription start site region 72708	1209 bp downstream
Tssr72709	transcription start site region 72709	1260 bp downstream