rs46638556 SNP Detail

Summary

• ID
  rs46638556
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:48041479 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGGA CTTGAGTGGG GAGAGGGTCT
  Y
  CAGTGTGGGT AGTCACTGTC CTGTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss145709012	ENSMUSSNP4061802	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss325406557	CHEV_17_47867503	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs46638556					SNP	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48041479 () rs orientation: forward

Symbol	Name	Function Class
Pgc	progastricsin (pepsinogen C)	within coordinates
Rr528106	regulatory region 528106	155 bp proximal
Tssr5147	transcription start site region 5147	1803 bp downstream
Tssr5148	transcription start site region 5148	1241 bp upstream
Tssr5149	transcription start site region 5149	929 bp upstream
Tssr145004	transcription start site region 145004	1812 bp downstream
Tssr145005	transcription start site region 145005	1791 bp downstream
Tssr145006	transcription start site region 145006	1762 bp downstream
Tssr145007	transcription start site region 145007	1730 bp downstream
Tssr145008	transcription start site region 145008	1709 bp downstream
Tssr145009	transcription start site region 145009	1681 bp downstream
Tssr145010	transcription start site region 145010	1299 bp downstream
Tssr145011	transcription start site region 145011	1280 bp downstream
Tssr145012	transcription start site region 145012	1263 bp downstream
Tssr145013	transcription start site region 145013	1211 bp downstream
Tssr145014	transcription start site region 145014	417 bp downstream
Tssr145015	transcription start site region 145015	402 bp downstream
Tssr145016	transcription start site region 145016	398 bp downstream
Tssr145017	transcription start site region 145017	44 bp upstream
Tssr145018	transcription start site region 145018	56 bp upstream
Tssr145019	transcription start site region 145019	87 bp upstream
Tssr145020	transcription start site region 145020	108 bp upstream
Tssr145021	transcription start site region 145021	134 bp upstream
Tssr145022	transcription start site region 145022	166 bp upstream
Tssr145023	transcription start site region 145023	193 bp upstream
Tssr145024	transcription start site region 145024	304 bp upstream
Tssr145025	transcription start site region 145025	648 bp upstream
Tssr145026	transcription start site region 145026	904 bp upstream
Tssr145027	transcription start site region 145027	1837 bp upstream
Tssr145028	transcription start site region 145028	1865 bp upstream
Tssr145029	transcription start site region 145029	1906 bp upstream
Tssr148459	transcription start site region 148459	1753 bp upstream
Tssr148460	transcription start site region 148460	1701 bp upstream
Tssr148461	transcription start site region 148461	1689 bp upstream
Tssr148462	transcription start site region 148462	1646 bp upstream
Tssr148463	transcription start site region 148463	1273 bp upstream
Tssr148464	transcription start site region 148464	1188 bp upstream
Tssr148465	transcription start site region 148465	427 bp upstream
Tssr148466	transcription start site region 148466	393 bp upstream
Tssr148467	transcription start site region 148467	75 bp downstream
Tssr148468	transcription start site region 148468	106 bp downstream
Tssr148469	transcription start site region 148469	196 bp downstream
Tssr148470	transcription start site region 148470	1873 bp downstream
Tssr148471	transcription start site region 148471	1892 bp downstream
Tssr148472	transcription start site region 148472	1908 bp downstream
Tssr148473	transcription start site region 148473	1925 bp downstream
Tssr148474	transcription start site region 148474	1944 bp downstream