rs46639226 SNP Detail

Summary

• ID
  rs46639226
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:186960674 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G AGAAGAGATA ACTGTCCTTA CAGGTGGATT GTCATGTCGT
  CTAGCTGCTG GAAATGAAAA GTCTTGCTTG TTACGTTCTT CTTGTTTAAT GATCATAGCA
  M
  CAAGGAAGTA TTGTAGCAAC TGGCAAGGTA TCAGTAACAC AATAGAATTA TTTTATGTGT
  CCATAAAAAG TACCTCAGTA GAGAGCGAGG ATCACTAACG A                    
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss146461124	ENSMUSSNP2114554	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs46639226					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:186960674 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gpatch2	G patch domain containing 2			Intron
				Noncoding-Transcript-Variant
Rr425579	regulatory region 425579			1531 bp distal
Rr425580	regulatory region 425580			1585 bp distal
Rr425581	regulatory region 425581			68 bp proximal