rs46639845 SNP Detail

Summary

• ID
  rs46639845
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:15309703 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGAATAAA TAAGAAGAGA
  CAGGAGAAAG ATTTGAAGAG AAAATAAAGC TAAATATTAC ATTAGGGTAT GTATTTGATC
  TTCAACAACT AATTCCATCA TTCTGCCATT TATTAACAAT ATAGTCTCTT AAAATTTCCA
  ACTCTTTGAT ATTAGGTTTT TTTTTTTTCC TCAGAGAGGG AATCCTAGTG CCCAGTTCCC
  Y
  TTGAAAATTC TCATCCTAAG CTCCAATACA CAGAGCACTT AACTAACCCT CCCTGTTCAA
  CTGAAACTTA AACACTAAAC AGTTTTATAC TATAATTCAA TTTCTATTCT CTCCAGTGCT
  TTCAGTTTTT CAAAGTCCTA TGAAAAGTAG CTCATTGGGA AACATCTTCA TTACTAGAAG
  AGATATTAGA CTCACGTGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60372695	NES15870453	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46639845					SNP	C	C	C	C	C	T	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60372695	NES15870453	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:15309703 () rs orientation: forward

Symbol	Name	Function Class
Rr573768	regulatory region 573768	363 bp proximal
Rr573769	regulatory region 573769	485 bp proximal