rs46639947 SNP Detail

Summary

• ID
  rs46639947
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:113394626 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGTT GTGATGAAGC AGTATCTCTG
  S
  TGCTGTGTTT CCTGTGTCCA GGGTG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	LG/J	SM/J
ss138742454	ENSMUSSNP648001	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss324175506	CHEV_12_114669217	CHEVERUD	SCREENING_POP	f	SNP		C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	LG/J	SM/J
rs46639947					SNP	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:113394626 () rs orientation: forward

Symbol	Name	Function Class
Igh	immunoglobulin heavy chain complex	within coordinates
Ighd4-1	immunoglobulin heavy diversity 4-1	468 bp upstream
Ighg	Immunoglobulin heavy chain (gamma polypeptide)	within coordinates
Ighj1	immunoglobulin heavy joining 1	1173 bp upstream
Ighj2	immunoglobulin heavy joining 2	1491 bp upstream
Ighj3	immunoglobulin heavy joining 3	1874 bp upstream
Tssr115504	transcription start site region 115504	766 bp downstream
Tssr118012	transcription start site region 118012	1873 bp upstream
Tssr118013	transcription start site region 118013	1858 bp upstream
Tssr118014	transcription start site region 118014	1754 bp upstream
Tssr118015	transcription start site region 118015	1658 bp upstream
Tssr118016	transcription start site region 118016	1504 bp upstream
Tssr118017	transcription start site region 118017	1164 bp upstream
Tssr118018	transcription start site region 118018	621 bp upstream
Tssr118019	transcription start site region 118019	565 bp upstream
Tssr118020	transcription start site region 118020	520 bp upstream
Tssr118021	transcription start site region 118021	403 bp upstream
Tssr118022	transcription start site region 118022	374 bp upstream
Tssr118023	transcription start site region 118023	211 bp upstream