rs46640163 SNP Detail

Summary

• ID
  rs46640163
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:122524363 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGCGCCCCAC CTTTGCTATG TTGCCCTTTG GAGACAAAAC
  GAGGTACTTC CTTCAACATC CCGCTGGCCA CTTTGTCTGG GGAAGGGCTG CGGGGGTTAG
  M
  GGCTGGCGGG GGCACCCCTC ACACCTGCGG GAGATGAAGC CGCCCGATAG ACGGGCAGTA
  TGACTTTGTC TCACCTTGCT TTTTCACGGA GATACTACA                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss135748510	ENSMUSSNP5037625	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss320914172	CHEV_3_122433632	CHEVERUD	SCREENING_POP	f	SNP		C	A
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs46640163					SNP	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122524363 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13771	CpG island 13771	within coordinates
Pde5a	phosphodiesterase 5A, cGMP-specific	within coordinates
Tssr31509	transcription start site region 31509	1719 bp downstream
Tssr31510	transcription start site region 31510	1699 bp downstream
Tssr31511	transcription start site region 31511	1580 bp downstream
Tssr31512	transcription start site region 31512	1532 bp downstream
Tssr31513	transcription start site region 31513	1481 bp downstream
Tssr31514	transcription start site region 31514	979 bp downstream
Tssr31515	transcription start site region 31515	845 bp downstream
Tssr31516	transcription start site region 31516	820 bp downstream
Tssr31517	transcription start site region 31517	785 bp downstream
Tssr31518	transcription start site region 31518	657 bp downstream
Tssr31519	transcription start site region 31519	595 bp downstream
Tssr31520	transcription start site region 31520	561 bp downstream
Tssr31521	transcription start site region 31521	475 bp downstream
Tssr31522	transcription start site region 31522	453 bp downstream