rs46642024 SNP Detail

Summary

• ID
  rs46642024
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:45110389 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGGGGCAT GCAAGGCCCA
  ACTGGACTTT TGAGGACAGG ACGGGCTCAT ACCAGGGTCT AATCTCAGAA GCCTGGGAAG
  AGAGCAAAGG GAAACGAGCC CAATCATGAA AAGGGGCTAA AGGAAGAAAC AGTAAGATGG
  GTCAAGGGAG CCACGCGGAG CAGGAAGAAT GTGCTGCTGA GGCCCTTAGT GGAAGGGGTA
  R
  CAAGGCCAGT TCTGCTGAGT CACGCTGAGC TCAGCTAGGC AGTGGGGCGG GCGGCAGGCC
  ACACCCGGGC TGACAGCCAG AAGTCCCCCG GCTAAGGGGC TTGTGGTCTG TTTTCCCTGT
  GTGGTCAGGC AGCTGTACGG CTCTGGAGTG GCTAGCCTAC ACGTATCTTT CTCCTGACTT
  GACGTCTGCG GTGGTCTGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss61003429	NES16114218	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs46642024					SNP	G	G	G	G	G	A	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61003429	NES16114218	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45110389 () rs orientation: forward

Symbol	Name	Function Class
Bax	BCL2-associated X protein	732 bp downstream
Cpgi19060	CpG island 19060	1535 bp distal
Cpgi19061	CpG island 19061	831 bp distal
Ftl1	ferritin light polypeptide 1	1081 bp upstream
Gm10252	predicted gene 10252	665 bp downstream
Gm73429	predicted gene, 73429	within coordinates
Gm73431	predicted gene, 73431	44 bp upstream
Rr380754	regulatory region 380754	within coordinates
Rr646450	regulatory region 646450	591 bp distal
Rr646451	regulatory region 646451	856 bp distal
Rr646452	regulatory region 646452	within coordinates
Rr646453	regulatory region 646453	55 bp proximal
Rr646454	regulatory region 646454	488 bp proximal
Tssr66541	transcription start site region 66541	1277 bp downstream
Tssr66542	transcription start site region 66542	99 bp upstream
Tssr72395	transcription start site region 72395	1540 bp upstream
Tssr72396	transcription start site region 72396	1508 bp upstream
Tssr72397	transcription start site region 72397	1234 bp upstream
Tssr72398	transcription start site region 72398	1084 bp upstream
Tssr72399	transcription start site region 72399	19 bp upstream
Tssr72400	transcription start site region 72400	within coordinates