rs46643526 SNP Detail

Summary

• ID
  rs46643526
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:30226041 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCGA GTGCTCCAGA GAGCCTAGTG
  Y
  CATCACATTT ATGACATCAC TTTGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145438791	ENSMUSSNP4722246	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46643526					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:30226041 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi8934	CpG island 8934			1284 bp distal
Rr525146	regulatory region 525146			1993 bp distal
Rr525147	regulatory region 525147			1113 bp distal
Rr525148	regulatory region 525148			681 bp proximal
Tssr143604	transcription start site region 143604			1969 bp downstream
Tssr143605	transcription start site region 143605			1274 bp downstream
Tssr143606	transcription start site region 143606			1162 bp downstream
Tssr143607	transcription start site region 143607			588 bp upstream
Tssr147243	transcription start site region 147243			1427 bp upstream
Zfand3	zinc finger, AN1-type domain 3			Intron
				Noncoding-Transcript-Variant