rs46643684 SNP Detail

Summary

• ID
  rs46643684
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:110077029 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACACACAGGT GAGGTCAAGC CGAAACTTTT CAGGAAACCT
  TGCCAGCAGG CGGTGGTTTT GGTTTTGGTT TTGGGTGGCA GCTTTCTTCC ATTGGTGACC
  R
  CCTGTCCTGG GTTAGTAAGT CCGTAATCTC CAAGAACATT GTCAAAAGCT ACCTACCATC
  CCACACCTCA TCAGTAATTT CTCGGTCACC TCACCTCTGG                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61449775	NES16839727	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46643684					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61449775	NES16839727	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:110077029 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22373	CpG island 22373	1383 bp distal
Cspg5	chondroitin sulfate proteoglycan 5	within coordinates
Rr383903	regulatory region 383903	1023 bp upstream
Tssr87338	transcription start site region 87338	1725 bp downstream
Tssr87339	transcription start site region 87339	689 bp downstream