rs46643908 SNP Detail

Summary

• ID
  rs46643908
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:36918202 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACACACTT CCCTGCAAAA
  GAAATCACTT TCTTTAGGAA AACCAAACCA GAACTCCTTC CAGAGTCCCC AAGAGCTAAT
  GCCCCGACTC AGGGAGTCTG CAGGGTTTTC TGCAACCAGC GGCAGACCCT GGCCAGCAAG
  TCCCCTTAGG CGCCTCTGGG GTAGGCAATC TCCGGTCGCC TACCAAGCCG TACCGGGCGG
  Y
  CACTTACCTA TTTGCACCGC GAGGATCAGT GAAATATATC TGCCGTTCAA CTTAAGTCCC
  ATCCTACGTT TAGTCAAACC ATTTGCGACC GCAGACCTTT AAATAGTTAG TTTAGAGAAC
  GCGGGGGAAA GCTGAAAAAT AGGCATTGCC AACAAGTTCC GGGAGCGACA GAGACTTTAT
  GCACTGGGAA GGCAGAGGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61769736	NES17697932	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46643908					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61769736	NES17697932	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:36918202 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi5450	CpG island 5450			1885 bp distal
Cpgi5451	CpG island 5451			583 bp proximal
Cpgi5452	CpG island 5452			1687 bp proximal
Gm56572	predicted gene, 56572			660 bp upstream
Nrn1	neuritin 1			Intron
				Splice-Site
Rr477393	regulatory region 477393			1992 bp distal
Rr477394	regulatory region 477394			within coordinates
Rr477395	regulatory region 477395			239 bp proximal
Rr477396	regulatory region 477396			671 bp proximal
Tssr119271	transcription start site region 119271			628 bp upstream
Tssr122097	transcription start site region 122097			38 bp downstream
Tssr122098	transcription start site region 122098			65 bp downstream
Tssr122099	transcription start site region 122099			143 bp downstream
Tssr122100	transcription start site region 122100			176 bp downstream
Tssr122101	transcription start site region 122101			198 bp downstream
Tssr122102	transcription start site region 122102			222 bp downstream