rs46644645 SNP Detail

Summary

• ID
  rs46644645
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:18908543 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTATTTT TTATTATTTT
  TATATTTTTA TATATATATT TTTTTTTGCC CAGAAACCAT TCAGCTTTGG GTATAAATAC
  TTCTTCCCTT TTTTCTTCTT TTTTTCCTTT TTAAAAATAT TTGTTTGTTT AATGTATGTA
  AGTATACTGT TGCTATCTTC AGACACACCA GAAGAGGGCA TCCAATCCCA TTACAGATGG
  Y
  TGTGAGCCAC CATGTGGTTG CTGGGAATTG AACTCAGGAC CTCTGGACTA TTGGTATGTC
  TGAAGACAGC TACTGTGTAC TCATATAACA TAAATAAATC TTTTAAAAAA CAAAAGAACA
  AGAACAAATC AGGAACAAGC ATATTTTCTG AAATTGGGCC TTGTGGTATA TGCCTATTAA
  TCCCAGTACC AGAGGGTTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148469546	ENSMUSSNP4277992	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46644645					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:18908543 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18449	CpG island 18449	1424 bp distal
Cpgi18450	CpG island 18450	1676 bp proximal
Eml2	echinoderm microtubule associated protein like 2	1803 bp upstream
Gm71808	predicted gene, 71808	1481 bp downstream
Rr155270	regulatory region 155270	1143 bp distal
Rr155271	regulatory region 155271	within coordinates
Rr167137	regulatory region 167137	1342 bp distal
Rr167138	regulatory region 167138	857 bp proximal
Tssr64790	transcription start site region 64790	1798 bp upstream
Tssr64791	transcription start site region 64791	1828 bp upstream
Tssr64792	transcription start site region 64792	1865 bp upstream
Tssr64793	transcription start site region 64793	1895 bp upstream