rs46645990 SNP Detail

Summary

• ID
  rs46645990
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:18294599 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACAAATAG CTATAAATCT
  TGTGGACAAG CACCTAGCAA CCCATTCTGT TCTTTTTCTC CTGCTGAACT TTTTACCTAG
  CCAATATCCT GCTTTTTTAG AACAGGTACA TTCTCCCAGA AACAAAGCGA TTCTGTGTCA
  TATCCCCCCC CCCCCCCCGA CCCCCATACT CTACTTCTGT GGGCAATAAA ACCTGCCTGG
  A
  AATAATAAAA ATTTGACAGC TTGAACAATC AGACTTGCTG CCTGTCCTTT TGTTTCTCAT
  CCTTCATTCT CTCCACAGTT GGTTCTTCAC TCCCTGTTCG ACTGTCTTGC GGGCTGGGAC
  AAAGATCCTT TATGATACCT GAGATGAATC ATTCTTTGCT ATTAGTTTGT GCTATATACA
  ATGCAGATTT CAGAGAAAGC                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss148689435	ENSMUSSNP196599	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs46645990					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:18294599 () rs orientation: forward

Symbol	Name	Function Class
Defb44-ps	defensin beta 44, pseudogene	811 bp upstream
Gm71262	predicted gene, 71262	706 bp upstream
Tssr11066	transcription start site region 11066	793 bp upstream
Tssr11067	transcription start site region 11067	767 bp upstream