rs46646483 SNP Detail

Summary

• ID
  rs46646483
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:81065163 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGCCCAAG TGCCAGGATT
  AAAGGTGTAC ACCACCATTG CCAGTTTGGT CACTTTTACA ATTAGTTATC TATCTTGTCA
  TTGTGTAGGG TGTTGGTACT TCTTTGGCTA TTTCAGGGAG GTCAGAGGAC AAAGTGGAGG
  TCCTGGGTCT CTCCTTCTAC CATGTGGGTC CCAAGCAGCA AACTCAGGCC AACAGGTGTC
  Y
  CTAGGCTTAG CTCTGTGCTC CCAGAAGCCA CCAGAGTGCT GCCGACCAAG TCCTTTTGTG
  AGGTGAGCCC TTGCAGCTCT TTCTGGTTTG TGAACGGTAG TTACAACTGG GCTGGTTCTT
  CTTCCTCCCT CGCCGGCAAG GTATCGGGGC AGAGTGGTGC TCTGGTGCCA TGGAGATCCC
  TCAGACTGTC AGATGGAAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52388130	NES15266410	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46646483					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52388130	NES15266410	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:81065163 () rs orientation: forward

Symbol	Name	Function Class
Atcay	ataxia, cerebellar, Cayman type	within coordinates
Cpgi1955	CpG island 1955	1046 bp proximal
Rr435566	regulatory region 435566	142 bp proximal
Rr435567	regulatory region 435567	1321 bp proximal
Rr435568	regulatory region 435568	1494 bp proximal
Tssr98573	transcription start site region 98573	1429 bp downstream
Tssr98574	transcription start site region 98574	1444 bp downstream