rs46646595 SNP Detail

Summary

• ID
  rs46646595
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:69725397 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGTTAAAAT ATTTATGCAG AAATCAGGCT CCTGGGGCGA
  GTCAAAACTA TGGTGGGGGG GGGGGGGTAG AAAAAACGTG GTCTCTAAGG TACCTTTTTA
  R
  GAATTGACAG CTGTGAGCTA TTGGTAGATT CGGACTTAAC CAATAAACTT GCCTTAGAAC
  CCAGCAAACA AGCTTAAGTT GCAGCTGGGT TCTCCATTG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325671394	CHEV_18_69751980	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs46646595					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:69725397 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10192	CpG island 10192	23 bp proximal
Cpgi10193	CpG island 10193	892 bp proximal
Rr405727	regulatory region 405727	941 bp upstream
Tcf4	transcription factor 4	within coordinates
Tssr151833	transcription start site region 151833	475 bp upstream
Tssr151834	transcription start site region 151834	618 bp upstream
Tssr151835	transcription start site region 151835	628 bp upstream
Tssr151836	transcription start site region 151836	658 bp upstream
Tssr151837	transcription start site region 151837	884 bp upstream
Tssr151838	transcription start site region 151838	932 bp upstream
Tssr151839	transcription start site region 151839	1035 bp upstream
Tssr151840	transcription start site region 151840	1128 bp upstream
Tssr151841	transcription start site region 151841	1165 bp upstream
Tssr151842	transcription start site region 151842	1188 bp upstream
Tssr151843	transcription start site region 151843	1220 bp upstream
Tssr151844	transcription start site region 151844	1257 bp upstream
Tssr151845	transcription start site region 151845	1298 bp upstream
Tssr153821	transcription start site region 153821	966 bp downstream