rs46646927 SNP Detail

Summary

• ID
  rs46646927
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:32752241 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTGTCTTA GTGCCTCTCC
  CTAGTGACCA AGTACTCAAA TCTATGAGCC TGTGGGGGCC ATTCCTATTC AAACCTCCAT
  ACCCTGTTTC TGTGTCTGAG AAGTTGAGAT TCCAGTTACC TGTAATCTGA GCAGCGCTTG
  CACAGAAATG TCAGGGAACA TAAGATGGTG CTTTCTATCA TTCCTCATAA TACATATATC
  Y
  ACACTAAAAT GTCTATGTTG AAATTTGCCT TTCATAGTCA CTTACTTTGT GTATTTTACA
  GTATGGAGTA ATTCTAGGTA TACCTATTTT TTAAGAGGAA TTTTTTTTTT CTTTTTGGAC
  GGAGATAGTC TTGCAAATTT GTTTCTTAGC GTTTGTATCT AACAGTTGAA GCCTTTCCAA
  CAGTGGATTT AATAAACATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60384451	NES15878101	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46646927					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60384451	NES15878101	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:32752241 () rs orientation: forward

Symbol	Name	Function Class
Rr575012	regulatory region 575012	26 bp distal
Rr575013	regulatory region 575013	168 bp proximal
Rr575014	regulatory region 575014	304 bp proximal