rs46647620 SNP Detail

Summary

• ID
  rs46647620
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:13429135 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGTCCGCT CCCGCCGCGT
  TCCGCTGTCC TCTCTTCTCT CGTCCCTCGG CCCGGAGTCT CTGAGCGGCG GAGGTATGGA
  GGAGAAGGTG GAGTCCACCA CTACTCCAGA CGGCCCGTGC GTGGTGTCCG TACAGGAGAC
  GGAAAAGTGG ATGGAGGAGG CGATGCGAAT GGTGAGGAAT CGGGCAGGTG GATGCTGAGA
  R
  CGCAAACTTT CTCCCGGCCA TATCCTGACC AGAGTAGTTG AGCAAATGTG CCGGGCGCGC
  TATCTATCAT GTCTGAAAAT ACCTGAAGCA GCAACTTGTT TTATTCTAGG GGGAATTTTT
  CTTTAGCTTT GTCTCATAGT AATTGGGGTG AAGGGAAAAT ACAGAAACGG TTCGATTGAT
  GTATTACAGG GAGTCTTATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss52145449	NES15237011	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs46647620					SNP	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52145449	NES15237011	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:13429135 () rs orientation: forward

Symbol	Name	Function Class
Adat2	adenosine deaminase, tRNA-specific 2	within coordinates
Cpgi1315	CpG island 1315	within coordinates
Pex3	peroxisomal biogenesis factor 3	249 bp upstream
Rr368928	regulatory region 368928	80 bp downstream
Rr427802	regulatory region 427802	564 bp distal
Rr427803	regulatory region 427803	487 bp distal
Rr427804	regulatory region 427804	282 bp distal
Rr427805	regulatory region 427805	within coordinates
Rr427806	regulatory region 427806	1001 bp proximal
Tssr92399	transcription start site region 92399	152 bp downstream
Tssr92400	transcription start site region 92400	133 bp downstream
Tssr96771	transcription start site region 96771	521 bp upstream
Tssr96772	transcription start site region 96772	330 bp upstream
Tssr96773	transcription start site region 96773	306 bp upstream
Tssr96774	transcription start site region 96774	265 bp upstream
Tssr96775	transcription start site region 96775	238 bp upstream
Tssr96776	transcription start site region 96776	225 bp upstream