rs46647674 SNP Detail

Summary

• ID
  rs46647674
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:90788848 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGACCCCAG AAGTTCCTGA GTTTCAGGAA GCAACAGAAA
  GTACAGGAGC ATGCTATCAC CAAGTGAGAG TCAGACTGCT TGGTTCAACT TTGAAGATGT
  R
  AACACACAAG GTTTCAGAGT CACAGAAATG GTGTGGCAGA CTGCACCTGT CCACTTCAAC
  TGTGACCAGA TGCCTGAGGT GTGAGTGAGT GGTAGTCAGC                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60908465	NES15947985	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46647674					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60908465	NES15947985	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:90788848 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17728	CpG island 17728	1510 bp distal
Iqsec1	IQ motif and Sec7 domain 1	within coordinates
Rr634330	regulatory region 634330	1754 bp distal
Rr634331	regulatory region 634331	1253 bp distal
Rr634332	regulatory region 634332	1634 bp distal
Rr634333	regulatory region 634333	355 bp proximal
Tssr62052	transcription start site region 62052	1793 bp upstream
Tssr62053	transcription start site region 62053	1772 bp upstream
Tssr62054	transcription start site region 62054	1706 bp upstream
Tssr62055	transcription start site region 62055	1647 bp upstream