rs46648388 SNP Detail

Summary

• ID
  rs46648388
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:49592781 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGTTGTGA GTGGACATCA
  TGGGGTCACA GGGCTGGGTG TTGACAGAAC ACTGAAAAAA AAAAAGATAA AACAGAGAGA
  CTTGTAAGAA AAGTAACCCG GCAGAAAAGG TTTACATAGA AAATTGACAC AAGATATTAA
  ATTATGATAA AATGATAAAG TTACATATGG CAGAACATTG TTGAACAGAT ATGTAGAATT
  R
  AGGCTTCTAG AAGTTTTCAA ATGGAAGAAG CTAAGAAGTG CCAGGATATA GAACCTGGAT
  GAGGGAAGAT GCAAGATTAG AAACAGTGGT GAGTTCTCTG CACTGTGCTA AATATATTAT
  TGTTATGCTT CAGAATTCAA ATGTCCTTTG GAAAGCTGTG TGTTAAATGC CTGGCCCTCA
  AATTAACAAG AGGGCTCCAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60460797	NES16446401	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46648388					SNP	G	G	G	G	G	G	A	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60460797	NES16446401	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:49592781 () rs orientation: forward

Symbol	Name	Function Class
Gm15518	predicted gene 15518	within coordinates
Gm60046	predicted gene, 60046	1415 bp upstream
Rr404848	regulatory region 404848	1553 bp upstream
Rr516712	regulatory region 516712	111 bp distal
Rr516713	regulatory region 516713	within coordinates
Rr516714	regulatory region 516714	1310 bp proximal
Rr516715	regulatory region 516715	1426 bp proximal
Tssr138713	transcription start site region 138713	1795 bp downstream
Tssr138714	transcription start site region 138714	408 bp upstream
Tssr141329	transcription start site region 141329	1615 bp upstream
Tssr141330	transcription start site region 141330	1601 bp upstream
Tssr141331	transcription start site region 141331	1582 bp upstream
Tssr141332	transcription start site region 141332	1555 bp upstream
Tssr141333	transcription start site region 141333	724 bp upstream
Tssr141334	transcription start site region 141334	570 bp upstream
Tssr141335	transcription start site region 141335	352 bp downstream