rs46648417 SNP Detail

Summary

• ID
  rs46648417
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127691432 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTTTTTTC TTGCTAGCCC
  ATCATATAAG GGTAAACTGG GGGGCATGAA AGTAAAACAA CGAATGGTTT TGCTTTCCTT
  TAATCCGTGC ATTGAGGAAA AGGTTATGGT GTAGCTGGTA TATCAGACTG TCGATGGAAA
  TTATTTCCTA TTTAACAAAT AGGCCCAGAG ACGAGTAACT CGTTTGGGAA AGCCTCTTTT
  W
  AAATGCCTTC AGGGGCTGGA GAGATGGCTC AGCGGTTAAC AGTACTGACT GTTCTTTCAG
  AGATCCTGAG TCCTATCCCC AGCAATCAGA TGGTGGCTCA CCACCATGTG CAATGGAATC
  CAATGCCCTG TCCTGGTATG CAGGTATACA TGCAATAGAG CACTCAGATA CATAAAATAA
  ATAAACCTTA AAAAAAGAAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135874538	ENSMUSSNP1367167	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	A
ss320958013	CHEV_3_127600701	CHEVERUD	SCREENING_POP	f	SNP				A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46648417					SNP	T	T	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127691432 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13803	CpG island 13803	1260 bp distal
Fam241a	family with sequence similarity 241, member A	1460 bp upstream
Rr398009	regulatory region 398009	1210 bp downstream
Rr584896	regulatory region 584896	1764 bp distal
Rr584897	regulatory region 584897	969 bp distal
Tssr35608	transcription start site region 35608	1550 bp upstream
Tssr35609	transcription start site region 35609	1513 bp upstream
Tssr35610	transcription start site region 35610	1446 bp upstream