rs46648844 SNP Detail

Summary

• ID
  rs46648844
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:110647999 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGTGAATCT CGGGGCGCAA TCTCCTGGGA GAAAGGTGGG
  CTTAGCCCAA AGAGGGATCA GAGCTCACAT AGAGTGGCTT CCTCCGGCTG GAGAGATGGC
  T
  CAGTGGATAA GAGCACTGGC TGCTCTTCCA GGGGTCCTGA GTTCAATTCC CATGGTGGCT
  CACAACCATC TGTAATGGGA TCTGATGCCC TCTTCTGCT                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss138692551	ENSMUSSNP1951842	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs46648844					SNP	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:110647999 () rs orientation: forward

Symbol	Name	Function Class
1700001K19Rik	RIKEN cDNA 1700001K19 gene	Intron
Gm53768	predicted gene, 53768	1199 bp upstream
Rr472964	regulatory region 472964	11 bp distal
Tssr117784	transcription start site region 117784	992 bp downstream
Tssr117785	transcription start site region 117785	1041 bp downstream