rs46648903 SNP Detail

Summary

• ID
  rs46648903
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164118233 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTCC CTGCCACTTC TCTGATTCAG
  R
  AACAGGGACT TCTCTTTGTA CTCAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148221298	ENSMUSSNP2967990	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss320605187	CHEV_2_164102049	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs46648903					SNP	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164118233 () rs orientation: forward

Symbol	Name	Function Class
D2Mit29	DNA segment, Chr 2, Massachusetts Institute of Technology 29	799 bp proximal
Svs4	seminal vesicle secretory protein 4	within coordinates
Tssr21549	transcription start site region 21549	355 bp downstream
Tssr21550	transcription start site region 21550	243 bp downstream
Tssr21551	transcription start site region 21551	789 bp upstream
Tssr21552	transcription start site region 21552	833 bp upstream
Tssr27409	transcription start site region 27409	317 bp upstream
Tssr27410	transcription start site region 27410	287 bp upstream
Tssr27411	transcription start site region 27411	262 bp upstream
Tssr27412	transcription start site region 27412	235 bp upstream
Tssr27413	transcription start site region 27413	220 bp upstream
Tssr27414	transcription start site region 27414	208 bp upstream
Tssr27415	transcription start site region 27415	189 bp upstream
Tssr27416	transcription start site region 27416	764 bp downstream
Tssr27417	transcription start site region 27417	773 bp downstream
Tssr27418	transcription start site region 27418	844 bp downstream
Tssr27419	transcription start site region 27419	854 bp downstream
Tssr27420	transcription start site region 27420	874 bp downstream
Tssr27421	transcription start site region 27421	898 bp downstream
Tssr27422	transcription start site region 27422	916 bp downstream
Tssr27423	transcription start site region 27423	954 bp downstream
Tssr27424	transcription start site region 27424	984 bp downstream
Tssr27425	transcription start site region 27425	1005 bp downstream
Tssr27426	transcription start site region 27426	1263 bp downstream
Tssr27427	transcription start site region 27427	1941 bp downstream
Tssr27428	transcription start site region 27428	1987 bp downstream