rs46649075 SNP Detail

Summary

• ID
  rs46649075
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127764866 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTACCTAC CTGGCTGTTT
  TCTCTTCTCT GGTGTTCGCT GGGCTGTACA ACCATTATCG GCCACTGGGT GGCGCTGAAG
  CGCCAGGCAA ATTATTTGCT GTGGTCAGGC CATCATTTTG ACTTTTAGCC AACACTAAAT
  GTTACAGGGA AAGGTTACTG ACTTCTGCAG TCTTTGAGAT ACAATATTTT ATTATCTGTC
  Y
  ATTTCCCTTG AGTTTTTACT TGACAAAGTC TGAAGGCATT TTCTTTTTGG TTTTAGATTA
  GAGATATTAA TTTATTTGTA CATTTTTGTG ACAAGTGGAG TGTTGAAAAA AAAAAAAAAC
  CATACTGTTA ACTACGTGGT GAGGTGCATT CTATACAACC TTAATAACTA GTGACATGGG
  TTAAACTTGG GGATGCGGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320958805	CHEV_3_127674135	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs46649075					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127764866 () rs orientation: forward

Symbol	Name	Function Class
Gm35667	predicted gene, 35667	within coordinates
Rr52	regulatory region 52	within coordinates
Rr584913	regulatory region 584913	6 bp distal
Rr584914	regulatory region 584914	122 bp distal