rs46649739 SNP Detail

Summary

• ID
  rs46649739
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:98178504 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCTGGGCT TGCAGCAACG
  ACCCCGGACC GCCCACAGCC AACAACCACA GGCCAGGGAA CAGCCAGCTC CCAGGGCTGC
  GCGCCCGGGA CCGACCGGCC ACCATCCTGT GGCCGGGGCC CGGCAGCTCT CTCTGGCTCA
  CAGTCCCTTG GGCTCGGGGT TCTGGGCTCC GGGCTTCACA GAGCAGAGAC GTGAAAGAGG
  Y
  GGAGTCACCG GGGACTCGCC CGGGGGTCAG AGGCTGAGCG GGGCTGGGAT GCCCTCTCCA
  AGCTCAGAGC CACCCAACAG CTGCCACTGA GGAGAGAGAG CGAGGTCCTG GGAGGACAAA
  GAGAGTCTCC GCAGCCGCCA CAGCTGCCGC CGGAACTCTG GGCAAATCCC AGTGGACAGA
  GTCCAGTTCT CCCACTCCGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss61199547	NES16709296	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs46649739					SNP	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61199547	NES16709296	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:98178504 () rs orientation: forward

Symbol	Name	Function Class
Antxr2	anthrax toxin receptor 2	within coordinates
Cpgi16083	CpG island 16083	within coordinates
Gm42759	predicted gene 42759	5 bp upstream
Rr615103	regulatory region 615103	307 bp proximal
Tssr1554	transcription start site region 1554	307 bp downstream
Tssr47433	transcription start site region 47433	50 bp upstream
Tssr47434	transcription start site region 47434	80 bp upstream
Tssr47435	transcription start site region 47435	450 bp upstream
Tssr47436	transcription start site region 47436	619 bp upstream
Tssr47437	transcription start site region 47437	654 bp upstream
Tssr51988	transcription start site region 51988	29 bp upstream
Tssr51989	transcription start site region 51989	18 bp upstream
Tssr51990	transcription start site region 51990	within coordinates
Tssr51991	transcription start site region 51991	82 bp downstream
Tssr51992	transcription start site region 51992	152 bp downstream
Tssr51993	transcription start site region 51993	325 bp downstream
Tssr51994	transcription start site region 51994	349 bp downstream
Tssr51995	transcription start site region 51995	492 bp downstream
Tssr51996	transcription start site region 51996	652 bp downstream
Tssr51997	transcription start site region 51997	690 bp downstream
Tssr51998	transcription start site region 51998	730 bp downstream
Tssr51999	transcription start site region 51999	765 bp downstream
Tssr52000	transcription start site region 52000	786 bp downstream
Tssr52001	transcription start site region 52001	806 bp downstream
Tssr52002	transcription start site region 52002	826 bp downstream
Tssr52003	transcription start site region 52003	868 bp downstream