rs46649789 SNP Detail

Summary

• ID
  rs46649789
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:51510455 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAAGAAAT GCTTTAAACT
  ATTTGCTGTT ATTTTGAATT TCAGAGTAGT GACTTGTACA AAGAACAAAA TTTTCTGAGC
  AATGCAATTT TAATGCACAC ATAGGTTGGT AAACAGGTAA AAGAAAGCAA GTTTAGGGCT
  CTAACTCTAG CCCAGTCAGC TTTGAAGTTA ACATGATGCT ACCACATGTT GCTGGTTGAA
  Y
  AAAACTTTGT ACTACTGAAG AGTGTTAGGA ACCAAGTAAA TCATACAAAA GTACCCTTCT
  TGGAAAACGT AAAGCTGCCT TTTCTTTTTA GGGTGAATCT AGTTTTAGTA TTCTTACAAA
  TTAGCTTTAT ACGAAACAAG CTGAAAATTC GATGGCTTTA AGAATTCTTT CACGATTAAT
  GATGTAGCTC AGTGGTGAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss149257807	ENSMUSSNP4198182	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs46649789					SNP	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:51510455 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19159	CpG island 19159	486 bp proximal
Fancf	Fanconi anemia, complementation group F	within coordinates
Gas2	growth arrest specific 2	1308 bp upstream
Gm45235	predicted gene 45235	658 bp downstream
Rr647289	regulatory region 647289	1550 bp proximal
Tssr2273	transcription start site region 2273	1098 bp upstream
Tssr66888	transcription start site region 66888	1299 bp upstream
Tssr72647	transcription start site region 72647	1509 bp downstream