rs46650465 SNP Detail

Summary

• ID
  rs46650465
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:123260450 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCATTTGT TAGAGAATTG
  ATCTGTACAG TCTAAAAAGA GGTCTTTCAG GTTATGGCAA GACCATCAGA CAATGCTGTG
  GACTTTTAGC AATGGGAACA AGTCATTTTA CTTATGTCCC AGTAATACAT ACATGTGCAG
  TCCTTCTGAT GCCTGATAGA TATTTTCTTA TGTTGGATTT TGGTTGTTAT TACATTCACT
  S
  TTGTTCTTCT TCATGCATGT AAGCCATGTC CCTTGTATTT CCTTGCACTT AGTCCAGAGG
  ACTTATTTCT GGCATCTCAC AAATCCAAGG CATACTGTAG AAACAGGGTA TATCATTCCA
  GTTCTTCCTG GAGTTTGAAG AGTCCCTTAT GGTGGCACAG TCCTCCACCA AAACTATATT
  GTTGGGCTCC CCAGCATCCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60936899	NES16189357	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46650465					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60936899	NES16189357	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:123260450 () rs orientation: forward

Symbol	Name	Function Class
Clec4e	C-type lectin domain family 4, member e	within coordinates
Tssr58808	transcription start site region 58808	711 bp downstream
Tssr58809	transcription start site region 58809	74 bp downstream
Tssr58810	transcription start site region 58810	49 bp downstream
Tssr58811	transcription start site region 58811	within coordinates
Tssr63019	transcription start site region 63019	1919 bp upstream
Tssr63020	transcription start site region 63020	987 bp upstream
Tssr63021	transcription start site region 63021	909 bp upstream
Tssr63022	transcription start site region 63022	870 bp upstream
Tssr63023	transcription start site region 63023	815 bp upstream
Tssr63024	transcription start site region 63024	717 bp upstream
Tssr63025	transcription start site region 63025	685 bp upstream
Tssr63026	transcription start site region 63026	664 bp upstream
Tssr63027	transcription start site region 63027	626 bp upstream
Tssr63028	transcription start site region 63028	601 bp upstream
Tssr63029	transcription start site region 63029	573 bp upstream
Tssr63030	transcription start site region 63030	517 bp upstream
Tssr63031	transcription start site region 63031	487 bp upstream
Tssr63032	transcription start site region 63032	456 bp upstream
Tssr63033	transcription start site region 63033	442 bp upstream
Tssr63034	transcription start site region 63034	416 bp upstream
Tssr63035	transcription start site region 63035	401 bp upstream
Tssr63036	transcription start site region 63036	334 bp upstream
Tssr63037	transcription start site region 63037	301 bp upstream
Tssr63038	transcription start site region 63038	276 bp upstream
Tssr63039	transcription start site region 63039	208 bp upstream
Tssr63040	transcription start site region 63040	164 bp upstream
Tssr63041	transcription start site region 63041	117 bp upstream
Tssr63042	transcription start site region 63042	97 bp upstream
Tssr63043	transcription start site region 63043	80 bp upstream
Tssr63044	transcription start site region 63044	45 bp upstream
Tssr63045	transcription start site region 63045	22 bp downstream
Tssr63046	transcription start site region 63046	41 bp downstream
Tssr63047	transcription start site region 63047	64 bp downstream
Tssr63048	transcription start site region 63048	92 bp downstream
Tssr63049	transcription start site region 63049	107 bp downstream
Tssr63050	transcription start site region 63050	131 bp downstream
Tssr63051	transcription start site region 63051	183 bp downstream
Tssr63052	transcription start site region 63052	1696 bp downstream
Tssr63053	transcription start site region 63053	1806 bp downstream
Tssr63054	transcription start site region 63054	1973 bp downstream
Tssr63055	transcription start site region 63055	2000 bp downstream