rs46652052 SNP Detail

Summary

• ID
  rs46652052
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:134582748 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATAGA GTGAGAAGTC CAGGGAGAGA
  K
  CCGGGCAGCC TCTGCCTGTA GCCAA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss133782476	ENSMUSSNP1908751	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T	T
ss321980822	CHEV_6_134555803	CHEVERUD	SCREENING_POP	f	SNP				T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46652052					SNP	G	T	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:134582748 () rs orientation: forward

Symbol	Name	Function Class
Gm38910	predicted gene, 38910	within coordinates
Rr133397	regulatory region 133397	1548 bp distal
Rr133398	regulatory region 133398	1453 bp proximal
Rr147832	regulatory region 147832	1949 bp distal
Rr147833	regulatory region 147833	254 bp proximal
Tssr59244	transcription start site region 59244	14 bp downstream