rs46652139 SNP Detail

Summary

• ID
  rs46652139
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:118270142 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTAAGGAGG GATGTGGCAG
  CACAGAGCGA GAGCTGTGTA AGATCACAGC ACAGAGGGAG AGCTGTGTAA GATCACTAAA
  TAGCAATGGC CTGCCCAATT GTGAAGTAAG GACATAAGAA TGAACTGCTG GGGCTGGAGA
  GATGGCTCAG TGGGCAGAGG TGCCTGTTGC CAGGTCTGGC CTAAGTTTGA TCCCTGGGAC
  R
  GACCTACATG GTGGAGGGGG AAAGCCAACA AGTTGTCCTC TGACCACCAA CACAAAATTA
  GAAGTTACTT TAAAAAAGAA GAGTCGGCTC CCCTCCTGAG CAGAGGCAGC CACCCTCTCC
  TGTCTTTCCC AGTAAATCTC TAGTGTGGGG TTTGTTGTGC CCTGTGACTT CGTAGTGGTC
  CTTGGCTCCT GAGCAGGAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147307548	ENSMUSSNP5758630	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
ss321283084	CHEV_4_118085550	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46652139					SNP	A	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:118270142 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Med8	mediator complex subunit 8			Intron
				Noncoding-Transcript-Variant
Tssr38656	transcription start site region 38656			1187 bp downstream