rs46652679 SNP Detail

Summary

• ID
  rs46652679
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:57368945 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C CCCGAGCCAC GCTCCCAGCC CCTTTTACTT TTGAAATAGG
  GTTTATTCAG GCTGGCTTTG AACTTGGGGT CCTCCTGCCT CAGCCTCCAG AATACATTTA
  R
  AATACAGGTT AGCATTCCCA GGTCTGACTT CAGGGTGTGA GTTCTTCAGT GTTTCCCATC
  GGAGCCCGCC TCTTATAAGT GTGTATCTTT CTGGAGTGTC G                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss145809643	ENSMUSSNP1660765	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs46652679					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:57368945 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9390	CpG island 9390	1987 bp distal
Cpgi9391	CpG island 9391	1122 bp distal
Cpgi9392	CpG island 9392	19 bp proximal
Crb3	crumbs family member 3	within coordinates
Rr405393	regulatory region 405393	1483 bp downstream
Rr529261	regulatory region 529261	1592 bp distal
Rr529262	regulatory region 529262	within coordinates
Rr529263	regulatory region 529263	365 bp proximal
Tssr145365	transcription start site region 145365	1188 bp downstream
Tssr145366	transcription start site region 145366	315 bp upstream
Tssr145367	transcription start site region 145367	372 bp upstream
Tssr145368	transcription start site region 145368	408 bp upstream
Tssr145369	transcription start site region 145369	541 bp upstream
Tssr145370	transcription start site region 145370	580 bp upstream
Tssr148876	transcription start site region 148876	44 bp downstream